# Add heatmaps for cyano with correlation in expression for the pathways

Gene copies per MAG genome and transcriptome

metaT_copies <- read_tsv("../results/gene_copies_expressed_per_mag.tsv")

kable(metaT_copies, caption = "Copies expressed in the metatranscriptome per MAG") %>%
  kable_styling(bootstrap_options = c("striped", "hover")) %>%
  scroll_box(width = "700px", height = "400px")
Copies expressed in the metatranscriptome per MAG
MAG phnA phnC phnD phnE phnF phnG phnH phnI phnJ phnK phnL phnM phnP phnW phoA PhoB phoD phoH phoU phoX ppa ppk pstA pstB pstC pstS sphX BACL Domain Phylum Class Order Family Genus Species location
P1994_106_bin43 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 1 1 0 0 1 0 1 0 0 1 BACL241 d__Bacteria Verrucomicrobia Verrucomicrobiae Pedosphaerales Pedosphaeraceae NA NA transect
P1994_107_bin119 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 BACL252 d__Bacteria Bacteroidetes Bacteroidia Cytophagales Cyclobacteriaceae Algoriphagus NA transect
P1994_108_bin102 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 1 1 1 1 0 0 BACL35 d__Bacteria Proteobacteria Gammaproteobacteria Betaproteobacteriales SG8-40 NA NA transect
P1994_116_bin178 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 1 BACL64 d__Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudohongiellaceae NA NA transect
P1994_119_bin73 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 1 1 1 1 1 2 0 BACL75 d__Bacteria Cyanobacteria Oxyphotobacteria Synechococcales_A Cyanobiaceae Cyanobium NA transect
P1994_121_bin104 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 BACL149 d__Bacteria Proteobacteria Alphaproteobacteria Pelagibacterales Pelagibacteraceae IMCC9063 NA transect
P1994_121_bin230 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 8 4 2 0 1 1 1 1 1 0 1 BACL104 d__Bacteria Planctomycetes Planctomycetia Planctomycetales Planctomycetaceae NA NA transect
P1994_122_bin109 0 3 3 5 1 1 2 1 1 1 1 1 0 0 1 0 2 2 1 2 1 1 2 2 2 2 1 BACL185 d__Bacteria Cyanobacteria Oxyphotobacteria Nostocales Nostocaceae Nodularia Nodularia spumigena transect
P1994_122_bin236 0 1 1 1 0 0 0 0 0 0 0 0 0 0 2 0 0 1 1 0 1 1 2 2 2 2 1 BACL63 d__Bacteria Cyanobacteria Oxyphotobacteria Nostocales Nostocaceae Aphanizomenon NA transect
P1994_124_bin41 1 1 1 2 0 0 0 0 0 0 0 0 0 1 0 1 0 1 2 0 0 1 1 1 1 0 0 BACL10 d__Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Pseudorhodobacter Pseudorhodobacter sp1 transect
P1994_127_bin76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 1 1 0 1 0 1 1 1 0 0 BACL26 d__Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Porticoccaceae NA NA transect
P1994_129_bin89 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 1 0 0 0 0 0 0 BACL13 d__Archaea Crenarchaeota Nitrososphaeria Nitrososphaerales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp1 transect
P2236_102_bin110 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 1 BACL138 d__Bacteria Chloroflexi NA NA NA NA NA redox
P2236_112_bin168 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 1 1 0 0 1 BACL3 d__Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudohongiellaceae OM182 OM182 sp1 redox
P4201_101_bin152 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 1 0 1 1 1 0 1 BACL105 d__Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales IMCC2047 NA NA LMO
P4201_102_bin135 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 BACL21 d__Bacteria Bacteroidetes Bacteroidia Flavobacteriales Flavobacteriaceae BACL21 BACL21 sp1 LMO
P4201_103_bin31 0 1 1 1 1 1 1 1 1 0 0 0 1 0 0 1 0 3 1 1 0 1 1 1 1 1 0 BACL44 d__Bacteria Proteobacteria Gammaproteobacteria Betaproteobacteriales Burkholderiaceae RS62 NA LMO
P4201_103_bin59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 2 0 0 0 1 1 1 1 0 0 BACL234 d__Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudohongiellaceae OM182 NA LMO
P4201_105_bin178 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 2 1 1 0 1 BACL187 d__Bacteria Nitrospinae Nitrospinia Nitrospinales Nitrospinaceae NA NA LMO
P4201_106_bin4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 1 1 1 0 1 BACL2 d__Bacteria Actinobacteria Actinobacteria ACK-M1 BACL15 MAG-120802 MAG-120802 sp1 LMO
P4201_112_bin101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 1 0 0 0 1 1 1 0 1 BACL67 d__Bacteria Proteobacteria Gammaproteobacteria Betaproteobacteriales Methylophilaceae BACL14 NA LMO
P4201_114_bin172 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 2 1 0 1 1 2 1 2 0 1 BACL322 d__Bacteria Planctomycetes Planctomycetia Planctomycetales Planctomycetaceae NA NA LMO
P4201_116_bin52 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 1 1 1 0 0 BACL190 d__Bacteria Proteobacteria Alphaproteobacteria Puniceispirillales AAA536-G10 NA NA LMO
P4201_116_bin63 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 BACL76 d__Archaea Thermoplasmataeota Epipelagoarchaeia MGII MGIIB UBA91 NA LMO
P4201_119_bin37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 1 0 0 BACL325 d__Bacteria Proteobacteria Alphaproteobacteria Pelagibacterales Pelagibacteraceae NA NA LMO
P4201_120_bin144 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 1 1 1 1 0 0 BACL39 d__Bacteria Proteobacteria Alphaproteobacteria Puniceispirillales Puniceispirillaceae Puniceispirillum NA LMO
P4201_120_bin54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 1 1 1 0 0 BACL16 d__Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Porticoccaceae HTCC2207 NA LMO
P4201_120_bin71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 1 1 1 0 0 BACL144 d__Bacteria Proteobacteria Alphaproteobacteria Pelagibacterales Pelagibacteraceae IMCC9063 NA LMO
P4201_123_bin26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 1 1 0 0 1 1 1 1 0 1 BACL9 d__Bacteria Verrucomicrobia Verrucomicrobiae Methylacidiphilales UBA3015 UBA3015 UBA3015 sp1 LMO
P4201_124_bin70 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 BACL327 d__Bacteria Cyanobacteria Oxyphotobacteria Synechococcales_A Cyanobiaceae Cyanobium NA LMO
P6071_502_bin182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 3 1 0 0 0 1 0 0 0 0 0 BACL135 d__Bacteria Bacteroidetes Bacteroidia Chitinophagales Saprospiraceae NA NA LMO
P6071_505_bin209 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 2 0 0 0 1 2 1 0 0 BACL215 d__Bacteria Proteobacteria Alphaproteobacteria Pelagibacterales Pelagibacteraceae IMCC9063 NA LMO
P6071_508_bin152 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 1 0 2 0 1 1 1 0 1 BACL330 d__Bacteria Proteobacteria Gammaproteobacteria Betaproteobacteriales Nitrosomonadaceae NA NA LMO
P6071_511_bin177 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 1 0 1 1 1 0 1 BACL178 d__Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudohongiellaceae NA NA LMO
P6071_511_bin252 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 1 2 0 2 0 1 BACL94 d__Bacteria NA NA NA NA NA NA LMO
P6071_511_bin51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 1 1 1 0 0 BACL262 d__Bacteria Proteobacteria Alphaproteobacteria Pelagibacterales Pelagibacteraceae Pelagibacter Pelagibacter ubique LMO
P6071_514_bin159 0 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 2 2 0 0 1 0 1 1 0 1 BACL153 d__Bacteria Verrucomicrobia Kiritimatiellae Kiritimatiellales NA NA NA LMO
P6071_514_bin160 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 2 0 0 1 1 1 1 0 1 BACL14 d__Bacteria Proteobacteria Gammaproteobacteria Betaproteobacteriales Methylophilaceae BACL14 NA LMO
P6071_516_bin75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 BACL22 d__Bacteria Bacteroidetes Bacteroidia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sp1 LMO
P6071_517_bin195 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 1 0 0 0 0 0 0 0 0 0 BACL1 d__Bacteria Proteobacteria Gammaproteobacteria SAR86 D2472 D2472 D2472 sp1 LMO
P6071_526_bin59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 BACL38 d__Bacteria Bacteroidetes Bacteroidia NS11-12g NA NA NA LMO
P6071_532_bin163 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 1 3 0 BACL347 d__Bacteria Cyanobacteria Oxyphotobacteria Nostocales Microcystaceae Synechocystis NA LMO
SRR3727503_bin31 0 0 2 2 0 1 1 1 1 0 0 0 0 0 0 1 0 2 0 1 1 0 0 1 1 0 1 BACL214 d__Bacteria Proteobacteria Gammaproteobacteria Betaproteobacteriales Burkholderiaceae NA NA tjärnö
SRR3727505_bin154 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1 1 1 0 1 BACL349 d__Bacteria Cyanobacteria Oxyphotobacteria Pseudanabaenales Pseudanabaenaceae Pseudanabaena NA tjärnö
SRR3727508_bin38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 BACL8 d__Bacteria Bacteroidetes Bacteroidia Flavobacteriales Flavobacteriaceae MAG-120531 NA tjärnö
SRR3727512_bin105 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 1 1 1 0 1 BACL11 d__Bacteria Bacteroidetes Bacteroidia Flavobacteriales BACL11 BACL11 BACL11 sp1 tjärnö
SRR3727512_bin93 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 4 2 1 0 1 1 1 0 0 0 0 BACL62 d__Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Halieaceae IMCC3088 NA tjärnö
SRR3727517_bin7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 1 0 1 0 1 BACL81 d__Bacteria Bacteroidetes Rhodothermia Rhodothermales NA NA NA tjärnö
SRR3727521_bin101 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 2 1 0 0 0 BACL5 d__Bacteria Proteobacteria Alphaproteobacteria Pelagibacterales Pelagibacteraceae Pelagibacter Pelagibacter sp1 tjärnö
SRR3727525_bin46 0 1 1 2 0 1 1 1 1 1 1 0 1 0 0 1 0 3 1 1 1 1 1 1 1 0 0 BACL78 d__Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Litoricolaceae Litoricola NA tjärnö 
genome_copies <- read_tsv("../results/genome_copies_pho_regulon.tsv")

kable(genome_copies) %>%
  kable_styling(bootstrap_options = c("striped", "hover")) %>%
  scroll_box(width = "700px", height = "400px")
MAG phnA phnC phnD phnE phnF phnG phnH phnI phnJ phnK phnL phnM phnP phnW phnX phoA PhoB phoD phoH PhoR phoU phoX ppa ppk ppx/gppA pstA pstB pstC pstS sphX
P1994_101_bin102 0 1 1 2 1 1 1 1 2 1 1 1 0 0 0 0 1 0 1 0 1 0 0 1 0 1 1 1 0 0
P1994_101_bin44 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 1 0 0
P1994_102_bin119 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0
P1994_102_bin141 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 7 2 0 1 1 1 1 0 1 0 1 0 1
P1994_104_bin1 0 2 2 3 0 1 1 1 1 0 0 0 0 0 0 0 0 0 4 0 2 0 0 1 0 1 1 1 0 0
P1994_104_bin130 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 1 1 0 1 1 1 0 0
P1994_104_bin131 1 1 1 3 1 1 1 1 1 1 1 1 0 1 0 1 1 0 1 0 2 0 0 1 0 1 1 1 0 0
P1994_104_bin167 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 0 1 0 1 0 0 1 0 1 1 1 0 0
P1994_104_bin33 1 1 1 2 0 0 0 0 0 0 0 0 0 1 0 0 1 0 3 0 2 0 0 1 0 1 1 1 0 0
P1994_104_bin36 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 3 0 1 0 1 0 0 0 0 0 0 0
P1994_104_bin71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 1 0 1 1 0 1 1 1 0 0
P1994_104_bin73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 1 1 0 0 0
P1994_104_bin95 0 1 1 2 1 1 1 1 1 1 1 1 0 0 0 0 1 0 2 0 1 0 0 1 0 1 1 1 0 0
P1994_105_bin115 0 1 2 2 0 1 1 1 1 1 1 1 0 0 0 0 0 0 3 0 1 1 1 1 0 1 1 1 1 0
P1994_105_bin15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 0
P1994_105_bin20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0
P1994_105_bin90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 1 0 0 1 0 0 0 0 0 0
P1994_106_bin124 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0
P1994_106_bin179 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 0 2 0 0 1 0 1 1 1 1 0
P1994_106_bin183 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 1 0 0 1 0 1 0 0
P1994_106_bin40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0
P1994_106_bin43 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 1 0 0 1 0 0 1
P1994_107_bin110 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 1 0 0 1 0 1 0 1 0 0
P1994_107_bin119 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0
P1994_107_bin169 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 1 0 1 0 0 1 1 1 1 0
P1994_107_bin176 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 1 1 0 1 1 1 0 1
P1994_107_bin24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 1 1 1 1 0
P1994_108_bin102 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 1 0 1 1 1 0 0
P1994_108_bin183 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 1 1 0 1
P1994_108_bin193 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 1 1 1 1 0 1 1 2 1 0
P1994_108_bin20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 1 0 0 0 1 1 2 0
P1994_108_bin207 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0
P1994_108_bin210 0 2 2 2 0 1 1 1 1 2 1 0 0 0 0 0 0 0 3 0 0 1 0 1 0 1 1 1 1 0
P1994_108_bin231 1 2 3 2 0 1 1 1 1 1 1 1 0 1 0 0 1 1 3 0 2 1 1 1 0 1 1 1 1 0
P1994_108_bin233 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 1 1 0 0
P1994_110_bin124 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 1 1 1 0 0
P1994_110_bin153 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 1 0 0
P1994_110_bin17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 1 0 0 0 0 1 0 0 0 0 0 0
P1994_110_bin192 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 2 0 0 1 1 1 0 0
P1994_110_bin201 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 1 0 1 1 0 0 1
P1994_111_bin114 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 0 0 0
P1994_111_bin171 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 0
P1994_111_bin197 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0
P1994_111_bin213 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 1 0 1 0 0
P1994_111_bin93 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 3 0 1 1 2 1 0 1 1 1 0 1
P1994_111_bin95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 3 4 0 2 0 1 1 0 1 1 1 0 1
P1994_112_bin114 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0
P1994_112_bin164 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0
P1994_112_bin35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0
P1994_113_bin147 1 1 2 3 1 1 1 1 1 1 0 1 0 1 0 0 1 0 3 0 3 1 0 1 0 1 0 1 0 0
P1994_113_bin158 1 1 2 1 0 1 1 1 1 1 1 0 0 1 0 0 1 0 1 0 1 1 1 1 0 1 1 1 0 0
P1994_113_bin229 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
P1994_113_bin55 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 1 0 0 0 0 1 0 1 0 0
P1994_114_bin130 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 4 1 0 1 0 0 1 0 1 1 1 0 0
P1994_114_bin208 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 2 0 3 0 0 0 0 1 1 0 0 0
P1994_115_bin10 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 1 0 1 1 0 1 1 1 1 0
P1994_115_bin87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 7 1 0 2 1 1 1 0 1 1 1 0 1
P1994_116_bin146 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 2 1 0 1 0 0 1 0 1 1 1 0 0
P1994_116_bin163 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 3 0 1 1 1 1 1 1 1 1 0 0
P1994_116_bin178 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 1 1 1 0 1
P1994_117_bin134 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 4 0 1 1 0 1 1 1 0 0
P1994_117_bin80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0
P1994_118_bin17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 1 0 1 1 0 0 0 0 0 0
P1994_118_bin80 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 2 0 2 0 0 0 0 1 1 1 0 0
P1994_119_bin14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 4 0 0 1 1 1 0 1 1 1 1 0
P1994_119_bin190 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 1 1 1 0 0
P1994_119_bin196 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 1 1 1 1 0 2 1 1 1 0
P1994_119_bin214 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0
P1994_119_bin216 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 1 1 1 1 1
P1994_119_bin73 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 1 1 0 1 1 1 2 0
P1994_119_bin91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 1 0 0 0 0 0 0
P1994_120_bin146 0 2 1 1 1 1 1 1 1 1 1 1 0 0 0 0 1 1 3 0 1 1 0 1 0 1 1 1 0 0
P1994_120_bin164 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 0 2 0 1 1 0 1 1 1 1 0
P1994_120_bin172 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 2 0 1 0 0 1 1 1 1 0
P1994_120_bin182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 2 0 1 1 0 1 1 1 2 0
P1994_120_bin201 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0
P1994_120_bin217 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 3 0 1 0 1 0 0 1 1 1 0 0
P1994_120_bin226 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0
P1994_120_bin27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 2 0 0 0 1 0 0 0 0 0 0 0
P1994_120_bin54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0
P1994_120_bin69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0
P1994_121_bin104 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 1 0 0
P1994_121_bin110 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 2 0 0 1 0 1 1 1 0 0
P1994_121_bin132 0 2 2 3 0 1 1 1 1 1 1 1 0 0 0 0 1 0 5 0 1 0 1 1 1 1 1 1 1 0
P1994_121_bin164 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 1 0 1 0 1
P1994_121_bin167 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 3 0 0 1 0 1 0 1 0 1
P1994_121_bin198 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 2 0 0 0 0 1 1 1 0 1
P1994_121_bin20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0
P1994_121_bin226 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 2 1 0 0 0 1 1 1 0 1
P1994_121_bin23 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0
P1994_121_bin230 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 9 5 0 2 0 1 1 0 1 1 1 0 1
P1994_121_bin239 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 2 1 1 1 1 0 0 0 0 0
P1994_121_bin28 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 1 0 0 1 0 1 1 1 0 0
P1994_121_bin73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0
P1994_121_bin76 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 3 1 0 2 0 1 1 0 1 1 1 0 1
P1994_122_bin109 0 3 3 5 1 1 2 1 1 1 1 1 0 0 0 1 0 2 2 0 1 2 1 1 0 2 2 2 2 1
P1994_122_bin121 0 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 4 0 1 0 1 0 0 1 1 1 1 0
P1994_122_bin128 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 3 2 0 1 1 1 1 0 1 1 1 0 0
P1994_122_bin140 0 1 1 3 0 1 1 1 1 1 1 1 0 0 0 0 1 2 4 0 1 1 1 0 0 1 1 1 0 0
P1994_122_bin161 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 2 0 1 1 0 1 1 1 0 0
P1994_122_bin236 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 1 0 1 1 0 2 2 2 2 1
P1994_124_bin12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 2 0 2 0 1 0 0 1 1 1 0 0
P1994_124_bin176 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 1 0 1 0 0 1 1 2 0 1
P1994_124_bin188 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 3 0 1 0 0 0 0 1 1 1 0 1
P1994_124_bin41 1 1 1 2 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 2 0 0 1 0 1 1 1 0 0
P1994_125_bin102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 2 0 1 0 0 1 0 1 1 1 0 1
P1994_125_bin160 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 1 0 1 1 1 1 1
P1994_125_bin167 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 2 0 1 1 0 1 1 1 0 0
P1994_125_bin49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 2 0 0 0 0 2 2 2 0 0
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SRR3727512_bin71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0
SRR3727512_bin93 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 4 2 0 1 0 1 1 0 1 0 0 0 0
SRR3727516_bin191 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 1 1 0 0 0
SRR3727516_bin197 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 1 1 0 1
SRR3727516_bin261 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0
SRR3727516_bin34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 1 0 1 0 0 1 1 1 0 0
SRR3727516_bin47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 1 0 0 0 0 0 0
SRR3727516_bin63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 1 1 1 1 0 1 1 1 1 0
SRR3727516_bin75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 1 1 0 1
SRR3727516_bin76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 2 0 1 0 1 1 0 1 1 1 0 1
SRR3727517_bin169 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 1 1 2 0 1 1 1 0 1
SRR3727517_bin186 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 1 0 0 1 0 1 1 1 0 1
SRR3727517_bin213 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0
SRR3727517_bin53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0
SRR3727517_bin54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 1 0 0 1 0 1 1 1 0 1
SRR3727517_bin7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 1 0 1 0 1
SRR3727517_bin80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 2 2 0 1 0 1 1 0 2 2 1 0 0
SRR3727518_bin182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 1 0 0 0 0 0 0
SRR3727521_bin101 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 2 1 0 0 0
SRR3727521_bin52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 1 0 1 0 0 1 0 1 1 1 1 0
SRR3727522_bin82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0
SRR3727525_bin0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 1 1 0 1 0 1 0 0
SRR3727525_bin104 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 1 1 0 0
SRR3727525_bin108 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0
SRR3727525_bin113 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0
SRR3727525_bin114 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 2 0 1 0 0 1 0 1 1 0 0 0
SRR3727525_bin116 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 1 0 1 1 1 0 0
SRR3727525_bin188 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 1 1 0 1 1 1 1 0
SRR3727525_bin220 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 1 1 1 0 0
SRR3727525_bin33 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 1 1 1 1 0 1 1 1 1 0
SRR3727525_bin38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 1 0 0 1 1 1 0 1
SRR3727525_bin46 0 1 1 2 0 1 1 1 1 1 1 0 1 0 0 0 1 0 3 0 1 1 1 1 0 1 1 1 0 0
SRR3727525_bin66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 1 1 0 1 1 1 1 0
SRR3727525_bin85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 1 0 0 1 0 0 0 0 0 0
SRR3727525_bin88 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 1 1 1 0 2

#Correlation analysis with P-concentration

MAG_p_corr <- read_tsv("../results/Correlation_analysis/MAG_tot_expr_P_corr.tsv")
kable(MAG_p_corr) %>%
  kable_styling(bootstrap_options = c("striped", "hover")) %>%
  scroll_box(width = "700px", height = "400px")
p_conc MAG rho
Phosphate_Average Phosphate_Average 1.0000000
Phosphate_Average P4201_116_bin63 0.8586618
Phosphate_Average P4201_103_bin59 0.7594867
Phosphate_Average P1994_127_bin76 0.7560037
Phosphate_Average P1994_121_bin230 0.7470211
Phosphate_Average P4201_101_bin152 0.7303392
Phosphate_Average P4201_116_bin52 0.7286893
Phosphate_Average P4201_105_bin178 0.6988084
Phosphate_Average P1994_129_bin89 0.6573786
Phosphate_Average P6071_508_bin152 0.6370303
Phosphate_Average P2236_102_bin110 0.6181485
Phosphate_Average P1994_124_bin41 0.6031164
Phosphate_Average P1994_108_bin102 0.5943172
Phosphate_Average SRR3727512_bin105 0.5611366
Phosphate_Average P4201_102_bin135 0.4575619
Phosphate_Average P6071_514_bin160 0.4502292
Phosphate_Average P4201_114_bin172 0.4157654
Phosphate_Average P1994_121_bin104 0.3653529
Phosphate_Average P1994_122_bin236 0.3391384
Phosphate_Average P4201_112_bin101 0.2564620
Phosphate_Average P6071_511_bin51 0.2174152
Phosphate_Average P4201_120_bin54 0.2128323
Phosphate_Average SRR3727517_bin7 0.1840513
Phosphate_Average P6071_526_bin59 0.1761687
Phosphate_Average P6071_532_bin163 0.1583868
Phosphate_Average P6071_511_bin252 0.1242896
Phosphate_Average P1994_106_bin43 0.1158570
Phosphate_Average P6071_511_bin177 -0.0038497
Phosphate_Average P4201_103_bin31 -0.0824931
Phosphate_Average P1994_119_bin73 -0.1041247
Phosphate_Average SRR3727508_bin38 -0.1347388
Phosphate_Average P6071_517_bin195 -0.1444546
Phosphate_Average P6071_516_bin75 -0.1563703
Phosphate_Average P6071_514_bin159 -0.2001833
Phosphate_Average P4201_119_bin37 -0.2769936
Phosphate_Average P1994_116_bin178 -0.2909258
Phosphate_Average P4201_123_bin26 -0.3274061
Phosphate_Average P1994_107_bin119 -0.3483043
Phosphate_Average P6071_502_bin182 -0.3484876
Phosphate_Average SRR3727521_bin101 -0.3785518
Phosphate_Average P4201_124_bin70 -0.3910174
Phosphate_Average P6071_505_bin209 -0.5105408
Phosphate_Average P4201_120_bin71 -0.5162237
Phosphate_Average P2236_112_bin168 -0.5297892
Phosphate_Average SRR3727503_bin31 -0.6436297
Phosphate_Average P4201_120_bin144 -0.6505958
Phosphate_Average P4201_106_bin4 -0.6538955
Phosphate_Average P1994_122_bin109 -0.6755271
Phosphate_Average SRR3727525_bin46 -0.7050413
Phosphate_Average SRR3727505_bin154 -0.7114574
Phosphate_Average SRR3727512_bin93 -0.8142988 
knitr::include_graphics("../results/Correlation_analysis/correlation_lineplot_0.7.png")
line plot of the MAG-expression dynamics for mags with a correlation higher than 0.7 with P-conc

line plot of the MAG-expression dynamics for mags with a correlation higher than 0.7 with P-conc 

knitr::include_graphics("../results/Correlation_analysis/correlation_lineplot_0.5.png")
line plot of the MAG-expression dynamics for mags with a correlation higher than 0.5 with P-conc

line plot of the MAG-expression dynamics for mags with a correlation higher than 0.5 with P-conc 

kable(MAG_p_corr %>%
 dplyr::filter(rho <= -0.5 | rho >= 0.5) %>%
   inner_join(BACL_taxonomy, by = "MAG")) %>%
kable_styling(bootstrap_options = c("striped", "hover")) %>%
  scroll_box(width = "700px", height = "400px")
p_conc MAG rho BACL Domain Phylum Class Order Family Genus Species location
Phosphate_Average P4201_116_bin63 0.8586618 BACL76 d__Archaea Thermoplasmataeota Epipelagoarchaeia MGII MGIIB UBA91 NA LMO
Phosphate_Average P4201_103_bin59 0.7594867 BACL234 d__Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudohongiellaceae OM182 NA LMO
Phosphate_Average P1994_127_bin76 0.7560037 BACL26 d__Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Porticoccaceae NA NA transect
Phosphate_Average P1994_121_bin230 0.7470211 BACL104 d__Bacteria Planctomycetes Planctomycetia Planctomycetales Planctomycetaceae NA NA transect
Phosphate_Average P4201_101_bin152 0.7303392 BACL105 d__Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales IMCC2047 NA NA LMO
Phosphate_Average P4201_116_bin52 0.7286893 BACL190 d__Bacteria Proteobacteria Alphaproteobacteria Puniceispirillales AAA536-G10 NA NA LMO
Phosphate_Average P4201_105_bin178 0.6988084 BACL187 d__Bacteria Nitrospinae Nitrospinia Nitrospinales Nitrospinaceae NA NA LMO
Phosphate_Average P1994_129_bin89 0.6573786 BACL13 d__Archaea Crenarchaeota Nitrososphaeria Nitrososphaerales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp1 transect
Phosphate_Average P6071_508_bin152 0.6370303 BACL330 d__Bacteria Proteobacteria Gammaproteobacteria Betaproteobacteriales Nitrosomonadaceae NA NA LMO
Phosphate_Average P2236_102_bin110 0.6181485 BACL138 d__Bacteria Chloroflexi NA NA NA NA NA redox
Phosphate_Average P1994_124_bin41 0.6031164 BACL10 d__Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Pseudorhodobacter Pseudorhodobacter sp1 transect
Phosphate_Average P1994_108_bin102 0.5943172 BACL35 d__Bacteria Proteobacteria Gammaproteobacteria Betaproteobacteriales SG8-40 NA NA transect
Phosphate_Average SRR3727512_bin105 0.5611366 BACL11 d__Bacteria Bacteroidetes Bacteroidia Flavobacteriales BACL11 BACL11 BACL11 sp1 tjärnö
Phosphate_Average P6071_505_bin209 -0.5105408 BACL215 d__Bacteria Proteobacteria Alphaproteobacteria Pelagibacterales Pelagibacteraceae IMCC9063 NA LMO
Phosphate_Average P4201_120_bin71 -0.5162237 BACL144 d__Bacteria Proteobacteria Alphaproteobacteria Pelagibacterales Pelagibacteraceae IMCC9063 NA LMO
Phosphate_Average P2236_112_bin168 -0.5297892 BACL3 d__Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudohongiellaceae OM182 OM182 sp1 redox
Phosphate_Average SRR3727503_bin31 -0.6436297 BACL214 d__Bacteria Proteobacteria Gammaproteobacteria Betaproteobacteriales Burkholderiaceae NA NA tjärnö
Phosphate_Average P4201_120_bin144 -0.6505958 BACL39 d__Bacteria Proteobacteria Alphaproteobacteria Puniceispirillales Puniceispirillaceae Puniceispirillum NA LMO
Phosphate_Average P4201_106_bin4 -0.6538955 BACL2 d__Bacteria Actinobacteria Actinobacteria ACK-M1 BACL15 MAG-120802 MAG-120802 sp1 LMO
Phosphate_Average P1994_122_bin109 -0.6755271 BACL185 d__Bacteria Cyanobacteria Oxyphotobacteria Nostocales Nostocaceae Nodularia Nodularia spumigena transect
Phosphate_Average SRR3727525_bin46 -0.7050413 BACL78 d__Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Litoricolaceae Litoricola NA tjärnö
Phosphate_Average SRR3727505_bin154 -0.7114574 BACL349 d__Bacteria Cyanobacteria Oxyphotobacteria Pseudanabaenales Pseudanabaenaceae Pseudanabaena NA tjärnö
Phosphate_Average SRR3727512_bin93 -0.8142988 BACL62 d__Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Halieaceae IMCC3088 NA tjärnö

Correlation analysis genome adaptation?

knitr::include_graphics("../results/Correlation_analysis/correlated_mags_0.5_average_genome_copies.png")
Average copy number between postively and negatively correlated MAGs

Average copy number between postively and negatively correlated MAGs 

knitr::include_graphics("../results/Correlation_analysis/boxplot_expression.png")
Average tpp-expression value for each gene per mag per date

Average tpp-expression value for each gene per mag per date 

knitr::include_graphics("../results/Correlation_analysis/negatively_correlated_0.5_MAGs.png")
line plots of negatively correlated mags as sum of within mag epxression per date and coloured by pathway

line plots of negatively correlated mags as sum of within mag epxression per date and coloured by pathway 

knitr::include_graphics("../results/Correlation_analysis/positively_correlated_0.5_MAGs.png")
line plots of positively correlated mags as sum of within mag epxression per date and coloured by pathway

line plots of positively correlated mags as sum of within mag epxression per date and coloured by pathway